List of tools frequently used while genome assembly
...minimap (v. 0.2-r124-dirty) bwa (v. 0.7.12-r1039) I have used the following polishing tools Racon (v. not available) Pilon (v. 1.18) Nanopolish&nb...1933 days ago
Software for genome assembly !
.../github.com/Gabaldonlab/redundans 7 Arrow error correction https://github.com/PacificBiosciences/ GenomicConsensus 8 PILON error correction https://github.com/broadinstitute/pilon/wiki 9 BUSCO single copy gen...1347 days ago
3011 days ago
ONT assembly and Illumina polishing pipeline
...p a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem. Perform correction of contigs using pilon and the Illumina dataset...2357 days ago
Genome Assembly Tools and Software - PART1 !!
...show that KmerGenie’s choices lead to assemblies that are close to the best possible over all k-mer lengths. pilon v1.16 – Automated Assembly Improvement pilon uses read alignment analysis...2688 days ago