Results for "Plant Bioinformatics"
Bio-Scripts
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome....+)|\1\2/\2_genomic.fna.gz|' > genomic_file_bacteria # -for plant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly...2534 days ago
Download the gff files from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome....+)|\1\2/\2_genomic.gff.gz|' > genomic_file_bacteria # -for plant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly...2525 days ago
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd runc Reading package lists... Done Building dependency tree Read...1516 days ago
Pack a perl program with their dependencies on Ubuntu !
...can find the test script web.pl at https://bioinformaticsonline.com/snippets/v...~/Downloads/autoConTAMPR/bin$ ./web https://bioinformaticsonline.com #It return thi...ontiguous reconstructions of many dozens of plant and animal genomes, enabling new insig...1514 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/w...1206 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if...1049 days ago
- #R is a feature rich interpretive programming language originally released in 1995. It is heavily used in the bioinformatics community largely due to nume...
826 days ago
