SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 2015 N...2222 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecul...2176 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Ci...s using long sequencing reads", Hunt et al, Genome Biology 2015 Dec 29;16(1):294. doi: 1...2194 days ago
CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of circular genomes...amples of the various output types, see the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.ht...2158 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and...ssification using targeted short read sequencing.” Source Code for Biology and Medicine, 11, 13. do...2108 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structur...tations in GeneSeqer, a popular gene prediction program which is widely used for plant g...2052 days ago
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Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-d.... The Biotite package bundles popular tasks in computational biology into an unifying framework, w...1977 days ago
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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome seque...from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...1960 days ago