Genome Assembly Tools and Software - PART1 !!
...d scaffolds. Telescoper 0.2 – De novo Assembly Algorithm Telescoper is a local assembly algorithm designed for short-reads from NGS platforms such as Illumina. The reads...2679 days ago
Awesome perl frameworks, libraries and software - PART 1
...ind DB database files mattn/p5-Growl-Any - perl module that provide any growl application LyonsLab/coge - CoGe (Comparative Genomics) Platform hirose31/inspect-perl-proc&n...2483 days ago
2483 days ago
List of visualization tools for network biology
...tm Pathview Tool set for pathway-based data integration and visualization http://Pathview.r-forge.r-project.org/ PINA Integrated platform for protein interaction netwo...2282 days ago
List of visualization tools for genome alignments
...ractive Java application that uses a novel graph-based representation to display a sequence assembly and associated metadata http://www.bcgsc.ca/platform/bioinfo/software/abyss-explor...2277 days ago
Python learning resources for bioinformatics and computational biologist !
...The Coder's Apprentice: Learning Programming with Python 3 - Pieter Spronck (PDF) (3.x) The Definitive Guide to Jython, Python for the Java Platform - Josh Juneau, Jim Baker...2249 days ago
Some useful Bioinformatics links
...e/docs/step9.html Bandage by rrwick https://rrwick.github.io/Bandage/ Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design | B...2235 days ago
Mitochondrial genome assembly tools !
...tochondrial genomes. It starts with a reference mitogenome and iteratively refines the assembly using the read data. MITOS: MITOS is a web-based platform that provides a pipeline for...236 days ago