Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3963 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evalu...tools used for bench-marking. We further demonstrate that while existing tools are based on...1159 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutoria...sequencing data PubMed: 21478889 SNiPlay: a web-based tool for.../S11 DDBJ read annotation pipeline: a cloud computing-based pip...3500 days ago
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Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools cov...cterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gen..., Italy have developed Orione, a Galaxy-based framewor...anetti G, Fotia G. (2014) Orione, a web-based fra...3587 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing da...3587 days ago
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Software developed in pevsner lab
DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and No...f SNP Genotype Data triPOD: Detects chromosomal abnormalities in parent-child trio-based mic...3512 days ago