poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing tec...tions. To enable these applications, the bioinformatics community will need to design and build a suite of tools sp...2368 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that re...ets. Based on a database of given genomes, the program allows the user to design a metagenome by specifyi...2357 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple c...2265 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, proc...ndropy.org/ This includes: A comprehensive “getting started” primer...2217 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short...fragment, often a EST or partial gene segment, as "primer", to recursively blast nucleo...es that overlaps, directly or indirectly, with the "primer...2168 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model (LMM). G...1989 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools support...n of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depict...1945 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multi...ence alignment algorithm for protein sequences. The design of MSAProbs is based on a com...or shared-memory CPUs by employing a multi-threaded design, and further parallelized for...1775 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data...is work, we explore the use of hardware/software co-design and hardware acceleration to...ween two given sequences. The second key idea is to design a hardware accelerator design...1657 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in da...s; and many proteins bind chemicals other than those known, opening the way to design repurposable drugs, new chemi...1508 days ago