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How to Prepare your Bioinformatics CV ?
...and layout Always ensure that your CV is laser-printed on white, good quality pape...rs guidance on how to prepare a CV, has been reprinted in the widely read How to d...erally be no more than three pages. Quality of print - The CV should be printed on...3375 days ago
Installing Perl environment on Linux
...p;is a distributed revision control and source code management software which can help you to download files from GitHub server. echo means "print". >> means adding...2324 days ago
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Bookmarks
Download mutliple fasta file from NCBI in one GO!!
...k given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs....3912 days ago
Public Databases for Bioinformatics !
...unction x = random.random() time.sleep(x/10) print i, x ofp.write("%i\t...nd(pid) for pid in pids: os.waitpid(pid, 0) ofp.close() print "FINISHED" For use case 1 we...1141 days ago
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Files
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3868 days ago
- ...o such file or directory[bwa_aln_core] convert to sequence coordinate... 1.00 sec[bwa_aln_core] refine gapped alignments... 6.07 sec[bwa_aln_core] print alignments... PREPROCESS:Fast...
2153 days ago
Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again...
3923 days ago
Check the Size of a directory & Free disk space.
...uo;command with some flag gives you a better output than the default one. The option '-h' stands for human readable format. Therefore, in order to print the sizes of the files / dire...3704 days ago
- +11 more Pages
Top-level pages
- ...se Genome Databases: Circos to create concise, explanatory, unique and print-ready visualizations of your...uence, and its six-frame translation. Chromas It will display and prints chromatogram files from ABI...
3944 days ago
Most Commonly used Awk by Bioinformatician
...> output.txt extract column 2,4,5: awk '{print $2,$4,$5}' input.txt > output.txt awk 'BEGIN{OFS="\t"}{print $2,$4,$5}' input.txt show ro...er in this case): awk '{sub(/test/, "no", $0);print}' input.txt OK now h...3915 days ago
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Wire posts
News
BCIL Bioinformatics BITP Application !!
...the online application before 10th May 2015. After registering the online application you need to take the hard copy of it and send through post. Print out of this application shoul...3308 days ago
- ...) returns an object of class "Dlist" and hence prints tidily. (Windows.) shell()...respectively, binary fractions (exactly, see sprintf("%a")) and as decimals with...expense of slightly increasing the memory footprint. New function trimws() for r...
3307 days ago
Fun
Bioinformatician special skills !!
....)*+"/; /^[+-]?\ *(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?$/; perl -ne 'BEGIN{$/=">"}if(/^s*(S+)/){open(F,">$1")||warn"$1 write failed:$!";chomp;print F ">", $_}' There...3898 days ago
- ...his response -use warnings;for ($count=1; $count <=100; $count++) { print "It is in my gene!!!";}I gues...ile () { # "The Mothership Connection is here!" print “$_\n”; # Printin...
3703 days ago
Bio-Scripts
Python script to download covid genome !
...nk/files/ncov-sequences.yaml").text) seqs = seqs['genbank-sequences'] print("got %d sequences" % len(seqs...in x and x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna =...1138 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
...= Bio::SeqIO->newFh('-file' => "$inFile" , '-format' => 'Fasta'); $out = Bio::SeqIO->newFh('-format' => 'Genbank'); print $out $_ while ;...2918 days ago
- +159 more Bio-Scripts
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Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...within your conda environment. In this case, it should install things into your conda-directory. When you install packages via cpan it will also print the folder perl is installing...418 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...Verify the installation by running a BioPerl script or entering the following command to check the BioPerl version: perl -MBio::Perl -e 'print "$Bio::Perl::VERSION\n"'...424 days ago
- +18 more Comments
