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Comment on "Sibelia: A comparative genomics tool"
...ple: Sibelia -s loose Helicobacter_pylori.fasta Important note -- "Sibelia" requires some free space on HDD to run. If you experience any problems and see error messages that m...1282 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...he genome name in the output files (eg. genome1 from genome1.fsa). Header lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output...1283 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...everything’s ok! in this case, no output is good output, since the only output from the command is the potential problems with the contig names. If you run into any problems, run reapr facheck <a...1334 days ago
- ...performed by genome browsers like UCSC, IGB and IGV. However, R scripts can also be used to visualization. SAMStat SAMStat identifies problems and reports several statistic...
2135 days ago
- ...from Gene Ontology was not supported The above mentioned issues was faced by GeneSCF v1.1, v1.1-p1 users from 01/January/2017. All the problems are now rectified with new pa...
2658 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
One of my favourite lecture notes on "String Matching Problems and Bioinformatics" http://users.csc.calpoly.edu/~dekhtyar/448-Spring2013/lectures/lec03.448.pdf3827 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Tree Edit Distance Problems: Algorithms and Applications to Bioinformatics @ http://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/139423/1/transinf.E93.D.208.pdf3888 days ago
Comment on "R and Bioconductor Tutorial"
The book "Applied Statistics for Bioinformatics using R" provide an introduction into statistics in order to solve some problems of bioinformatics. http://cran.r-project.org/doc/contrib/Krijnen-IntroBioInfStatistics.pdf3900 days ago
Comment on "R and Bioconductor Tutorial"
In programming sector we generally rely on google for syntex, logic and other support. Now for R language related problems you can search on http://rseek.org/3900 days ago
Comment on "Python Education Material"
Python Educational Material Beginners: Non-programmer’s tutorial for Python by Josh Cogliati (PDF) Beginners: Python & programming trainig with&n...3908 days ago
