FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of var...1572 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...eak kmer count threshold, lower for more divergent genome (default: 0.95) -ek INT: expected number of kmers; does not affect the correctness of program but affects the memory usage...1564 days ago
1562 days ago
1552 days ago
BlobToolKit: A toolkit for genome assembly QC
...isualisation and filtering of preliminary or published genomic datasets even for highly fragmented assemblies. BlobTools2 is a command-line program to convert assemblies and ana...1548 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
...ed genomes, from 82 Viridiplantae species. More than half of these genomes have been sequenced, assembled and/or annotated with JGI Plant Science program resources. By integrating thi...1523 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with...1517 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
...onships are extremely valuable to researchers performing comparative analyses of genomic sequence. Here we present our initial work in the form a program called Mercator tha...1459 days ago
Far Manager Commands and Links !
Far Manager is a program for managing files and archives in Windows operating systems. Far Manager works in text mode and provides a simple and intuitive interface for perf...1425 days ago
parallelLastz: Lastz with multi-threads support.
...ithub.com/lastz/lastz) in parallel mode. This program is for single computer with m...use almost equal memory as the original lastz program. This is useful when you last...erence like human whole genome sequence. The program is an extension on the origin...1365 days ago