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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...launch in 2016. Here, we present a newly implemented background annotation engine for DFAST, which is also available as a standalone command-line program. The new engine can annotate...2362 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to o...2349 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...ram drawing as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "The output of the program is Microsoft XL table and pub...2349 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
...synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database of given genomes, the program allows the user to desig...2343 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...variants when combined to conventional public pipelines and ∼48% to the in-house commercial solution, with a minimal loss of sensitivity The program with a detailed manual is ava...2325 days ago
PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatica...2320 days ago
zPicture: A dynamic blastz alignment visualization
zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.2285 days ago