Results for "Programs"
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Phylogenomics/Phylogenetic website
...phylogenetics. Although we do have a Troubleshooting category for getting feedback on analyses, this is not a help site for running phylogenetics programs. A great place to chat about...3680 days ago
- Our international PhD and master programs are designed for students who desire focused training in the elements of biology, computer science, and information technology needed for a su...
1102 days ago
- ...SLAP, a context-sensitive local aligner for diverged sequences with large gaps. Access Spines here. http://www.broadinstitute.org/science/programs/genome-biology/spines
3007 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the co...2913 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genom...2904 days ago
Linux command line exercises for NGS data processing
...the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell (bash), but there are several additional shell programs on a typical Linux system suc...2872 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have b...ally expensive, forcing researchers to use faster abundance estimation programs, which only classify small su...2867 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2838 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which empl...
2815 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd),...
2804 days ago
