Results for "Protein Structure Prediction and Drug Design"
Blogs
List of motif discovery tools !
...iscovery: 2Dsweep -- protein annotation by secondary structure elements Perform secondary structure predictions on protein sequences..... Frog2 -- a FRee Online druG 3D conformation generator Produce 3D conformations of small drug compounds. HGPD -- Human Gene...2005 days ago
Useful links to therapy, disease, drug and drug-target network data:
...900 drug (~3500 experimental) and >1500 non-redundant protein entries http://www.drugbank.ca/ Drug-Target Network: network data of 890 drugs and 394 target human proteins http://www.nature.com/nb..., 25000 investigational drugs and 80000 chemical structures http://scientific.thoms...1446 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly...e source DNA sequence length, structure or composition is infer...p into millions of tiny parts and read on a sequencing computer...ly?In basic research into why and how they live, as well as in...r - http://www.baseclear.com/landing...1216 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldqu...946 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experimen...ltiple sequence alignments of proteins. • Deorowic...Multiple sequence alignment designed for huge families of proteins (even containing hundreds of thousands of sequences). • ...875 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural and functional annotations of proteins...ster variations between human and mouse View AREs in the human transc...689 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick B...ons. II. Amount of variation and degree of heterozygosity in n...et. Res. 23: 23-35. Understanding sequence variation 1. Beg...f the Neutral Theory in 1968 and 50 years on: a response to Ke...4. *Joshka Kaufmann and Le...689 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick B...ons. II. Amount of variation and degree of heterozygosity in n...et. Res. 23: 23-35. Understanding sequence variation 1. Beg...f the Neutral Theory in 1968 and 50 years on: a response to Ke...4. *Joshka Kaufmann and Le...589 days ago
- DeepMind’s artificial intelligence system AlphaFold2, predicts the 3D structure of a protein based on its...s to be a 50-year-old answer to the problem of protein folding.To read more: https://www.rasalsi.com/courses/computer-aided-drug-d...
550 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to expl...uences from various organisms and can identify perfect, compound, and imperfect SSRs. SSR Loca...an be used to analyze genomic and...mer3 is a web-based tool that designs PCR primers for SSRs. It can design primers for perfect and imper...437 days ago
