iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers...2646 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...ene prediction algorithms with homology based methods. The first version of NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 ha...2541 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262518 days ago
1378 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
...TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles, which describe smal...To efficiently search for regulatory relationships from over 20 million pubmed articles, we used sentence-ba...2322 days ago
2317 days ago
HTTDB - Horizontally transferred transposable elements database
...ndogenization events which is characterized by the stable integration a viral genomic fragment into the host genome. https://www.ncbi.nlm.nih.gov/pubmed/293153582289 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This is...2159 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
...olding of de novo genome assemblies based on chromatin interactions. Nature Biotechnology 2013 Dec;31(12):1119-25. doi: 10.1038/nbt.272. PubMed PMID: 24185095. ...2179 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...information for de novo genome assembly via transposase contiguity. Genome Research 2014 Dec;24(12):2041-9. doi: 10.1101/gr.178319.114. PubMed PMID: 25327137. ...2179 days ago