Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, H...Rene Warren and Steven Jones at Canada's Michael Smith Genome Sciences Centre. Python/W...3243 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...bacterial genome, written in Python and C Input: FASTQ referenc.../normal samples; dependent on python, bamtools, boost, and LAPACK...dquo;the same feature set and training data as CADD to train a deep...are four different datasets: training, validation, testing, and Cli...2909 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the following agenci...ers grants that support the clinical and/or research training of health professionals. These Health Professional Training Grants promote excellence in...2938 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quali...Genome-wide Physical Maps The purpose of this Python module is help scientists use...lder is an advanced wrapper for Nucmer, written in Python t...2686 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a...p;- Shapefile to SVG renderer in Perl famzah/langs-performance - C++ vs. Python v...2489 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (use...rom NGS data (k-mer based) Software (Python) https://github.com/danielna...colored de Bruijn graphs) Software (Python) http://github.com/cbib/MICA...ree topology (k-mer based) Software (Python)...2371 days ago
2351 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s t...tput in out.txt into a spreadsheet format, using a Python script. First, we need...king to run the script blast/blast-to-csv.py using Python:...2337 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used t...mminglanguagefor.me/why-learn-python and http://bioinformatic...Stuff - Al Sweigart Biopython (PDF) Build application...;(PDF) Hitchhiker's Guide to Python! (2.6) How to Make Mist...2255 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challe...fferent variants from the same protein occurring both in the datasets used for training and for evaluation of these t...2203 days ago