CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python l...2320 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Pe...ed pure-Perl API with no hidden magic and no requirements besides Perl 5.24.0 (versions as old as 5.10.1 can be used...2305 days ago
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Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resourc..._000001405.15_GRCh38_no_alt_analysis_set.fna.gz There are several other versions of GRCh37/GRCh38. What’...1538 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualization. It has fou...2237 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It pro.../ DendroPy is also hosted in the official Python repository: http://packages.python.org/DendroPy/ Requirements...ion DendroPy 4.x runs under Python 3 (all versions > 3.1) and Python 2 (Pytho...2204 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
This code is used to scaffold your assemblies using Hi-C data. This version implements some improvements in the ori...the following commands: cd SALSA make To run the code, you will need Python 2...2151 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The fol...columns in a matrix produced by the "comp". In addition, KAT contains a python s...1982 days ago
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