Estimate Genome Size with Jellyfish and R
...of the k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=string Output file name #--min-quality-char Base quality value. Version 2.2.3 of Jelly...2245 days ago
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2074 days ago
Installing pb-assembly on Linux !
...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...2033 days ago
Setting up falconUnzip conda environments for genome assembly !
...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...1989 days ago
1724 days ago
Samtools commands for bioinformatician !
...sal_sej.bam | less ### count reads (-c) by flag specified samtool view -c -f 4 sal_sej.bam ### count reads by quality value specified (-q) (>=) # -q : minimal quality value samtools view -q 42 -c...1602 days ago
1524 days ago
Tadpole is 250x faster than SPADes assembler !
...red by kmers with count below this will have its quality reduced. markdeltaonly=t...mark bad bases in reads containing errors. markquality=0 (mq) Set quality scor...975 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data417 days ago