Results for "R"
Blogs
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development o...Open2 More at https://bioinformaticsonline.com/snippets/view...or without the shell. You can read about it more in the docum...635 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is...ed object file: No such file or directory After that, the in...construction mcl: BLASP comparison of All-vs-ALl + MCL class...1153 days ago
List of useful machine / ai learning resources !
ML cheatsheet ! https://github.com/remicnrd/ml_cheatsheet Visual AI / ML https://setosa.io/ev/ Simple and efficient tools for predictive data analysis https://scikit-learn.org/stable/1130 days ago
Innovative blog and portfolio website!
Do you ever feel overwhelmed or frightened by browsing through someone else's beautiful, responsive portfolio website links and wishing you could create one for yourself?So there you have it...useful pages to mativate you https://brittanychiang.com/ https://ash...1046 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Na...sequences: Optimal enzymes for amplifying sequencing librari...a PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S....tto, T. D., Dillon, G. P., Degrave, W. S. & Berriman, M....1045 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGeni...mplicon Analysis) – separates complex mixtures of ampli...)● LeafGo – workflow to rapidly produce high-...990 days ago
Levenshtein and Damerau-Levenshtein distance !
...wn as Edit Distance, it is the number of transformations (deletions, inse...ons, or substitutions) required to transform a source string into t...quo;, you will need to change the first “o” to “a...ome frameworks also support the Damerau-Levenshtein distance: &nbs...948 days ago
- REST API The Representational State Transfer (REST) sample clients are provided for a number of programming languages. For detail...s, download the client and run the program without any arg...p2 For details see Environment setup for REST Web Serv...
942 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data...file. If you would like to override that you can specify it f...on = json format file with extra parameters for our snakemake...dot -Tsvg > dag.svg OR snakemake --dag | dot -T...932 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted fro...aphically distinct population"—say, another country or a province of a la...889 days ago
