Results for "RNA sequencing"
Top-level pages
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists di...pts, SINES - Non-functional copies of RNA genes which have been reinteg...long a DNA (deoxyribonucleic acid) or RNA (ribonucleic acid) strand tha...to the direction of transcription by RNA polyme...2230 days ago
- ...A. mate-pair: in paired-end sequencing, both ends of a single DNA or RNA fragment are sequenced, but t...is covered by 30 independent sequencing reads. Increased read-depth t...here only one end of a DNA or RNA fragment is sequenced. Contrast with...
2888 days ago
Genome Assembly Tools and Software - PART1 !!
..., like those produced by SMRT sequencing technologies (PacBio RS II) a...trons, novel introns, and alternative splicing. Its scripts can also e...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...tome assembler that assembles RNA-seq reads into transcripts. SSP aims...2704 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from...2541 days ago
Awesome perl frameworks, libraries and software - PART 1
...T and STDERR from Perl, XS or external programs beppu/squatting&nb...jsm - perl script for LiveJournal blog backup vti/underscore-...of utilities for Next-Generation Sequencing (NGS) data analysis masukomi...erl Framework for High Throughput Sequencing analysis gbarr/perl-libnet&n...2508 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors....DNA; DNA that is synthesized, by reverse transcriptase, from a Messenger RNA template ( Messenger RNA contai...2481 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...from reference sequences and RNA-seq data (k-mer based) Softw...pression of transcripts using RNA-seq data (uses k-mers)...e k-mers profiles of the RNA-seq paired-end reads Softwar...ction Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Software...2390 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good opt...is required for metagenomic sample data --rna this flag is required for RNA-Seq data --plasmid...[default: 250] --tmp-dir <dirname>...
2370 days ago
Single Cell RNAseq data analysis tutorial !!
...are the useful links: Single Cell RNAseq data analysis Tutorial A...low-level analysis of single-cell RNA-seq data A step-by-step work...Citrus: A toolkit for single cell sequencing analysis http://biorx...ctor models applied to single-cell RNA-seq data separate biological drivers...2369 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no sin.... We review all of the major steps in RNA-seq data analysis, including...on, differential gene expression, alternative splicing, functional anal...ne-level exploratory analysis and DE RNAseq analysi...
2369 days ago
