BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...are ambiguous between human and mouse. BBSplit tracks this additional ambiguity...ys be kept together.For example, if you had a library of something that was conta...orge.net/projects/bbmap/ The sensitivity can be raised to be equivalent to BBMap...2319 days ago
2310 days ago
PerlOneLiner for Bioinformatician
...set of 10 lines becomes one tab-separated lineperl -lpe '$\ = $. % 1...n) while $n; print $a*$b/$m' # Generate 10 random numbers between 5...everse 0..3' STRING CREATION AND ARRAY CREATION--------------------...rint all lines that contain only charactersperl -ne 'print if /^[[:a...2307 days ago
List of visualization tools for network biology
...arena3d.org Biana Data integration and network management h...projects/BioMiner Cell Illustrator Petri nets for mode...om/navigator1/ N-Browse Interactive graphical browser for bi...edu/pixie CellPublisher Interactive representations of bioch...2293 days ago
List of visualization tools for genome alignments
...ls, testing data quality, and generating result drafts. Its integration in analys...of results: ABySS Explorer Interactive Java application that us...f the sequence, and also its six-frame translation http://www.san...nsitive hashing algorithm to enumerate all unique sequences in an...2288 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...write, and execute, and everyone else can read and execute - good for programs that you want to share Ne...ate a tar named file.tar containing files tar xf file.tar — extract the files from file.tar tar...2285 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manip...ns which is the default action.Empty braces with out any action does n.... It wont perform default printing operation.Each statement in Actions...o use the concept of a conditional operator in print statement of the...2284 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to gen...notation and alignment has generated increasing interest in dev... http://urgi.versailles.inra.fr/development/blaster/ ...tbio.uga.edu/mak06.html MaskerAid http://blast.wustl.edu/mask.../tandem.bu.edu/trf/trf.html Transposon Cluster Finder http://...2279 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analy...verview of the workflow which includes Transcriptome/ Genome alignment,...ing events and gene fusion detection. Strand NGS also supports novel dis...the RNA-Seq data analysis workflow in Strand NGS. Details:Session 1: 28...2269 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual mov...ber of factors combine to make it far rarer in multicellular eukaryote...DNA must enter the host nucleus, integrate into the genome, and in mor...load & compile 20525630 RANGER-DTL / 2.0 HGT...855 days ago