Results for "Raku"
Bio-Scripts
$ sudo apt-get install rakudo [sudo] password for jit: Read...js-angularjs libtommath1 moarvm nqp rakudo 0 upgraded, 5 newly instal...tu.com/ubuntu bionic/universe amd64 rakudo amd64 2018.03-1 [3,246 kB]...cting previously unselected package rakudo. Preparing to unpack .../r...1559 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads$ git clone https://github.com/ugexe/zef.git Cloning into 'zef'... remote: Enumerating objects: 218, done. remote: Counting object...
1559 days ago
Raku script to find palindrome in genomes !
sub is-palindrome(Str $str) returns Bool { $str.=uc; # convert to uppercase $str.=subst:g/\s+//; # remove any spaces return $str eq $str.flip; } sub...433 days ago
Raku script to calculate GC content !
sub calculate-gc-content(Str $sequence) { my $gc-count = $sequence.comb(//).elems; my $total-bases = $sequence.chars; return $gc-count / $total-bases...120 days ago
Raku script to find SSRs in fastq file !
sub find-ssrs(Str $sequence) { my @ssrs; for 2..$sequence.chars -> $min-repeats { for $sequence.chars...$min-repeats -> $max-repeat {...120 days ago
Raku script to find repeats in sequences !
sub find-repeats($sequence, $min-repeat-length = 3) { my @repeats; for ^($sequence.chars - $min-repeat-length + 1) -> $i { my $substring = $sequen...102 days ago
Raku script to find microsatellites in DNA fragments !
sub find-microsatellites($sequence, $min-repeat-length = 2, $max-repeat-length = 6, $min-repeat-count = 3) { my @microsatellites; for my $repeat-length ($m...102 days ago
Raku script to find overlaps between two bed files !
#!/usr/bin/env raku # Check if the correct number of arguments are provided if @*ARGS.elems != 2 { say "Usage: ./compare_bed_files.raku file1.bed file2.bed"; ex...102 days ago
