Jabba: Hybrid Error Correction for Long Sequencing Reads
...n fasta or fastq format. These sequences will be corrected (e.g. PacBio reads). The corrections will be wri...fasta.The output is a file in fasta format with corrections of the long reads, and additionally a file in t...1987 days ago
LRCstats: Long Read Correction Statistics
...ead correction algorithms for long reads outputted by third generation...oduced by Pacific Biosciences. The reads produced by third generation...roduced by Illumina. However, long reads are plagued by high error rat...d correction algorithms using long reads produced by simulators (such...2317 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...run/configure supports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in...2317 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data....2312 days ago
2289 days ago
Carefully opt for human reference genome
...ce genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the fo...1543 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assemblies. We show how the contiguity...2257 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...Multi-CAR does not require prior knowledge concerning phylogenetic relationships among the draft and reference genomes and libraries of paired-end reads. To validate Multi-CAR, we ha...2257 days ago
Reference-free prediction of rearrangement breakpoint reads
...fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number of neighboring reads. When applied to a dataset wi...evious approaches, and yet produces fewer false-positive reads. To our knowledge, this is th...2255 days ago
2213 days ago