Japanese Multi Omics Reference Panel, jMorp
Japanese Multi Omics Reference Panel, jMorp, is a database of metabolome and proteome data in plasma obtained from volunteers in ToMMo. Metabolome data were measured by proton NMR...2346 days ago
Seal: SEquence ALignment evaluation suite
...o evaluate alignment algorithms, including: Reading a pre-existing reference genome from one or more FASTA files. Alternatively, generating an artificial reference genome based on input paramet...2334 days ago
LRCstats: Long Read Correction Statistics
...mulators (such as SimLoRD or PBSim) where the two-way alignments between the uncorrected long reads (uLR) and the corresponding sequences in the reference genome (Ref) are given in som...2332 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resour...d FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to...http://lh3.github.io/2017/11/13/which-human-reference-genome-to-use...1558 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...euristic method to further revise our single reference-based scaffolding tool CAR in...ple complete genomes of related organisms as references to more accurately order and...ylogenetic relationships among the draft and reference genomes and libraries of pair...2272 days ago
Reference-free prediction of rearrangement breakpoint reads
...s approaches, and yet produces fewer false-positive reads. To our knowledge, this is the first method to detect breakpoint reads without using a reference genome. https://github.com/e...2270 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...r is correct The gap estimate is similar to the true distance on the reference The problem of scaffolding...mal assignment of contigs in the output scaffolding to contigs in the reference scaffolding in the sense of t...2257 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph Ali...2230 days ago
2228 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickl...2222 days ago