Results for "Reference"
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Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford...Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference-free SNP detection: dealing w...2238 days ago
- ...inLength=200, nocleaning=True, nogapclosing=True, norearrangements=False, noreduction=True, noscaffolding=True, outdir='test/run1', overlap=0.8, reference='', resume=False, threads=4,...
2187 days ago
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o referenc...2179 days ago
Understanding BLASTn output format 6 !
...BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ff...d query (e.g., gene) sequence id 2. sseqid subject (e.g., reference genome) sequence id 3....2135 days ago
Steps to find all the repeats in the genome !
...e> with the path to your RepeatMasker .out file, and <length_file> with the path to a file containing the lengths of the reference elements. This script wi...245 days ago
Mitochondrial genome assembly tools !
...for the iterative assembly of mitochondrial genomes. It starts with a reference mitogenome and iteratively re...assembly. It supports various sequencing technologies and allows for reference-based or de novo assembly. N...239 days ago
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