BBTools for bioinformatician !
...vslow perfectmode maxsites=1000 It should be very fast in that mode (despite the vslow flag). Vslow mainly removes masking of low-complexity repetitive kmers, which is not usually a...2323 days ago
Junk part of the human genome unlocked
...NA is not stagnant as researchers originally had believed " Simple Quantitative PCR Approach to Reveal Naturally Occurring and Mutation-Induced Repetitive Sequence Variation on the Dro...3548 days ago
Resolving the complexity of the human genome using single-molecule sequencing
...close-gaps-chart-complexity-human-reference suggest a greater complexity of the human genome in the form of variation of longer and more complex repetitive DNA that can now be largely r...3273 days ago
Genome Assembly Tools and Software - PART2 !!
...e contigs. ATLAS GapFill 2.2 – Deals with the Repetitive Gap Assembly problemATLAS GapFill deals with the repetitive gap assembly problem by using...ny genomes, including many that are large and highly repetitive. Reconciliator 2.0 – T...2738 days ago
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Commercial and public next-gen-seq (NGS) software
...ahaSNP is a polymorphism detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by...3571 days ago
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Tags: Tallymer, method, compute, K-mer, frequencies, application, annotate, large, repetitive, plant, genomes
2323 days ago
ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence
ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is able to find repeats of any length and of any period (up to a maximum period of 4000). It can find highly decayed repeats missed by other software, and it will also be able to find very large repeats in highly repe...Tags: ULTRA, Tandem, Repetitive, Genomic, Sequence
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