Most Commonly used Awk by Bioinformatician
...y with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep |...calculate the sum of column 2 and 3 and put it at the end of a row or replace the first column: awk '{prin...3914 days ago
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Bioinformatics Web Application Development with Perl
...development as a cgi-bin directory full of messy scripts that spew warnings to STDERR, you're a decade out of date. Better yet, you can replace that mess piecemeal, thanks t...2323 days ago
PerlOneLiner for Bioinformatician
...alne '@M = (@M, @F); END { print max @M }' # Replace each field with its absolute...esperl -pe 's|\n|\r|' # Substitute (find and replace) "foo" with "bar" on each lin...>|m|<strong>(.*?)</strong>| # Replace all <b> tags with <s...2303 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...atabase built from the updatedb command. Much faster than find sed -i 's/day/night/g' file — find all occurrences of day in a file and replace them with night - s means sub...2282 days ago
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Creating conda environment for python2.7
...path. Use the Terminal or an Anaconda Prompt for the following steps. To create an environment: conda create --name myenv NOTE: Replace myenv with the envi...2191 days ago
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