Collection of molecular modelling and drug design related tutorial ...
...at RosettaCon 2012. The Collection is meant to both highlight new scientific developments within the Rosetta community and provide a rigorously reproducible workflow for each protocol. T...3833 days ago
Orione – a web-based framework for NGS analysis in microbiology
...loped Orione, a Galaxy-based framework consisting of publicly available research software and specifically designed pipelines to build complex, reproducible workflows for NGS microbiolog...3587 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and mu...3001 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...w approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemand...2522 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from metagenomes. It builds on the&...hereby making the whole process of binning easy and at the same time reproducible through the Rmarkdown format....2109 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast r...1984 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its flue...1549 days ago
BlobToolKit: A toolkit for genome assembly QC
...se the validity of sequence-based biological inference. BlobToolKit extends the BlobTools1/Blobology2 approach to simplify interactive and reproducible filtering. BlobToolKit is co...1548 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and d...809 days ago
Ten quick tips for deep learning in biology
...to maintain rigor, and discerning how work might have far-reaching consequences with ethical dimensions, the life science community can advance reproducible, interpretable, and high-qual...784 days ago