Software packages for next gen sequence analysis
...are at The Institute for Genomic Research in Maryland, USA. POSIX OS re...equences. Authors are from BCGSC. Paper is here. * SOAP - SOAP (Short Ol...er from UCSD (published in Genome Research). Uses a de Bruijn graph a...NA Methylation Patterning" Nature paper by Cokus et al. (Steve Jacobs...3255 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ce, scientific relevance (http://www.gene-talk.de/public/GeneTalk_Whitepaper_Annotations.pdf) GeneVetter...r annotating human genomic point mutations and data relevant to cancer researchers”; Web app; Suppor...2921 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular are...mic areas of basic biological research that are not heavily supporte...;The Leakey Foundation offers research grants of up to $25,000 to do.... The Foundation for Alcohol Research: As one can probably ass...2950 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches o...rom the 3' (three prime) end or the 5' (five prime) end of the strand. Recent resea...2224 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality...ler (wgs-assembler) is scientific software for DNA research. It can reconstruct long sequ...n over 40 countries around the world. Life Science resea...2698 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&nbs...: A Computational Pipeline for Single Cell RNA-Seq Profiling Analysis https://resea...2363 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit...developed to measure the similarity of two different populations in ecological resea...2353 days ago
Computational resources for TE discovery and TE detection
...trf.html Transposon Cluster Finder http://www.mssm.edu/labs/warbup01/paper/files.html TE nest http://www....search/transpo/transpo.html TSDfinder http://www.ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDfinder/ Tu L...2286 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally,...2267 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list o...2215 days ago