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...for human (or similar) data. The master branch is configured for WGS data; there is an exome branch configured for variant calling in exome data.To run the pipeline you will need Ru...3646 days ago
- ...QL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big genomic data easily. Run batch analyses like principal...
3419 days ago
- ...(http://www.ncbi.nlm.nih.gov/pubmed/19815776). There are two options to run ShRec3D (on linuX only so far): the first one uses the Matlab complier runtime environment (MCR), the se...
3412 days ago
Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud
InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to-use web interface and allows an accurate search across all functions, tools and pipeline...3175 days ago
- ...ncing into contiguous sequences (called contigs). One can use the sequences of different sequencing technologies either in a single assembly run (a true hybrid assembly) or b...
2944 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evalu...2944 days ago
- ...g genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAdes. SPAdes version 3.7.1...
2931 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...s repeat masking, since it will automatically detect ambiguous mappings. Satsuma has parallelization built-in and is designed to run on multi-core architectures. The run-time for aligning two bird-si...2908 days ago
- ...e central scaffold-builder and comprises two modules: i) the interative_scaffold_extender, which works with big, unambiguous contigs, or when they run out, single copy contigs, and...
2846 days ago
- ...30 genomes are required to get acceptable results, but the method gains power across genomes and processing more genomes provide better results.To run discovery or genotyping on a...
2792 days ago
