Seal: SEquence ALignment evaluation suite
...ized interface. Parsing the output of the alignment tool and calculating the number of reads that were correctly or incorrectly mapped. Computing run times and measures of accurac...2323 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scripts...2321 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392) is easy to install/run/configure supports various t...2321 days ago
2293 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
..., and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST...2245 days ago
MITObim - mitochondrial baiting and iterative mapping
...quencing platforms. Below you can find a few basic tutorials for how to run MITObim and I encorage you to...the testdata that comes with this Repo, just to make sure everything is running smoothly on your system....2198 days ago
Metassembler: merging and optimizing de novo genome assemblies
...ome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typically run multiple algorithms in an att...2198 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
...et of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, or contigs that were output from a prior run of PRICE or any other assembl...2164 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
...pScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microb...2164 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
...documentation for a description of the ways that it can be configured to explore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker conta...2164 days ago