Results for "SAM tool"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...– Automated Gap Closing tool FGAP aims to improve genom...nd genomes from environmental samples. Celera Assembler contribu...sh; Pair-end Reads Connection tool to facilitate Genome Assembly...ulk sequencing of mixed virus samples. TAG 0.91 – Tra...2678 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be exe...rs develop algorithms. Pseudocode is a "text-based" detail (algorithmic) design tool. The rules of Pseudocode are...2652 days ago
Awesome perl frameworks, libraries and software - PART 1
...n Simplenote tobert/perl-ssh-tools - A more capable DSH /....8.7 briandfoy/Learning-Perl-Sample-Files - Extra files fo...rt-parser - A Perl based tool to parse DMARC reports from a...'s intended to work using the same backend to share tasks and be...2482 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...s organisms present in metagenomic samples and profiles their abunda...f microbial genomes in metagenomic samples (k-mer based) Software (...cts/lmat/ stringMLST k-mer-based tool for MLST directly from the ge...k-mer-based ultrafast metagenomics tool for assigning taxonomy to seq...2364 days ago
Single Cell RNAseq data analysis tutorial !!
...l for comparative transcriptomics, e.g. samples of the same tissue from different specie...g/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing...hub.com/jw156605/SLICER SinQC: A Method and Tool to Control Single-cell RNA-se...2343 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...dash; Standalone command line tool, takes just a few minutes per...BI environment. BEACON (automated tool for Bacterial GEnome Annotati...ion) is KEGG's internal annotation tool for K number assignment of KE...2324 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...regarding which sequences came from which reference file. BBSplit is a tool that bins reads by mapping t...reads go to the bin of the reference they map to best. There are also disambiguation options, such that re...2307 days ago
- ...lse if(NR%4==2) print;}' > file.fa FASTX-toolkit fastq_to_fasta is available in the FASTX-toolkit that scales really well wi...put.fastq > output.fasta Seqtk From the same developer, there is another option using a tool called seqtk seqtk seq...
2298 days ago
- ...commands :- Code: $ samtools view -b -S file.sam > file.bam Then you wil...d to use Code: $ samtools sort file.bam file-sorted followed by Code: $ samtools index file-sorted.bam...ust type Code: $ samtools or samtools followed by t...
2284 days ago
List of visualization tools for network biology
Network analysis is any structured te...cies and/or population level. Few tools published in BMC are listed...Igraph Collection of network analysis tools with the emphasis on efficie...ata http://tinyurl.com/yEdGraph/ Web tools for network analysis APID&n...2281 days ago
