Comment on "Short-read assembly using Spades !"
...number of short sequencing reads. SPAdes (St. Petersburg genome assemb...eps for short-read assembly using SPAdes: Quality control of raw...immomatic or FastQC. Running SPAdes: After quality control, the n...uation of assembly: After running SPAdes, the next step is to evaluate...437 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assemb...brief overview of how to use SPAdes for short-read assembly: Install SPAdes: SPAdes can be downloaded fro...files for each read. Run SPAdes: To run SPAdes, open the term...ditor or a genome browser. SPAdes also provides several options...442 days ago
Comment on "Spades tutorial PDF"
Spades tutorial http://cab.spbu.ru/files/release3.11.1/manual.html#yaml830 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...github, so let’s go get those: git clone https://github.com/mw55309/poRe_scripts.git We will assemble using SPAdes, so let’s go get that: wget http://spades.bioinf.spbau.ru/release3.6.2/...2196 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly to...ll also only use 3 kmers to save time: ./SPAdes-3.6.2-Linux/bin/spades.py --o...--nanopore minion.pass.2D.fastq -o SPAdes_hybrid & Use samtools...2196 days ago
2365 days ago