Results for "SRA"
Bio-Scripts
(JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1229 days ago
- ...filename(s) and deflines (only for single table dump) --table Table name within cSRA object, default is...
2139 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence...om the archive. fastq-dump is in the SRA toolkit. It allows directly d...tq-dump --split-files SRR1770413 #SRA stores data in a particular c...get ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra instant/reads/ByRun/sra/S...1572 days ago
To convert just one specific read group to fastq
...ncing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the project run information. esearch -db sra -query $PROJECT | efetch -fo...1555 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1067 days ago
Download lumpy skin disease data !
Location https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=880745 The raw genome sequence data from the 2022 outbreak in India is available in the SRA Project PRJNA880745423 days ago
