truvari: Structural variant comparison tool for VCFs
Structural variant comparison tool for VCFs Given benchmark and comparsion sets of SVs, calculate the recall, precision, and f-measure. Spiral Genetics Motivation1397 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
SVEngine (Structural Variants Engine) SVEngine is a multi-purpose and self-...ome scale spike-in of thousands of SV events of various types in bo...ple and matched sample scenarios. SVEngine takes as input referenc...nal phylogenetic trees in cancer. SVEngine outpus alterred contigs...1394 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...genera with the Generalized Linear Model implemented in DESeq2 [Love 2014].SHAMAN is compatible with standard formats for metagenomic analysis (.csv, .tsv, .biom) and figures can be do...1350 days ago
1265 days ago
DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
...cal workflow for paired end Illumina Miseq data: raw amplicon sequencing data is processed into the table of exact amplicon sequence variants (ASVs) present in each sample...1264 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
PaReBrick. The tool takes a collection of strains represented as a sequence of oriented synteny blocks and a phylogenetic tree as input data. It identifies rearrangem...933 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologic...789 days ago
786 days ago
JASMINE: Jointly Accurate Sv Merging with Intersample Network Edges
This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information...a number of other values. Jasmine represents the set of all SVs across samples as a network,...666 days ago
Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
...Monkeypox virus (monkeypox) ORGANISM Monkeypox virus Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxvir...642 days ago