Results for "SVS"
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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...eletions. To support the growing interest in larger structural variant (SV) discovery, MOSAIK provides explicit support for handling known-sequence SVs, e.g. mobile element insertio...2904 days ago
- ...d segment of the query. We show that YAHA detects more breakpoints in less time than BWA-SW across all SV classes, and especially excels at complex SVs comprising multiple breakpoin...
2660 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...t reads that cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by d...2200 days ago
- ...It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex structural variants(SVs)....
2151 days ago
LAMSA: fast split read alignment with long approximate matches
...ds of base-pairs). LAMSA takes takes the advantage of the rareness of SVs to implement a specifically d...rs; mean-while, it also has good ability to handle various categories of SVs. LAMSA is open source and...2180 days ago
- Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized...r/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and larg...
2167 days ago
Genome U-Plot: a whole genome visualization
Genome U-Plot for producing clear and intuitive graphs that allows researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and ch...2120 days ago
- ClipCrop for detecting SVs with single-base resolution using soft-clipping information. A soft-clipped sequence is an unmatched fragment in a partially mapped read. To assess the...
1930 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
...sed method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs), insertion/deletion variants (indels), and structural variants (SVs) simultaneously with a single...1557 days ago
truvari: Structural variant comparison tool for VCFs
Structural variant comparison tool for VCFs Given benchmark and comparsion sets of SVs, calculate the recall, precision, and f-measure. Spiral Genetics Motivation1402 days ago
