Results for "Sam"
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SimLoRD: A read simulator for third generation sequencing reads
...e.) The read lengths can be determined in four ways: drawing from a log-normal distribution (typical for genomic DNA), sampling from an existing FASTQ file (typical for RNA), sampling from a a text file with...2104 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...sed for any dataset which can be expressed as a series of genomic positions. It's main features are: Import of mapped data from mapped data (BAM/SAM/bowtie etc) Creation of data...2084 days ago
- This is a tool for detecting structural variations using soft-clipping information From SAM files. https://github.com/shinout/clipcrop
2060 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display sta...generation sequencing projects. When applied to SAM/BAM files all statistics...tor sequences, causing poor mapping. Apart from this SAMStat can be used to verify ind...2024 days ago
- ...ncing data. DeepVariant relies on Nucleus, a library of Python and C++ code for reading and writing data in common genomics file formats (like SAM and VCF) designed for painles...
1582 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables p...1575 days ago
CrossMap: program for genome coordinates conversion between different assemblies
...ies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig,&nb...851 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
...ransfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing...733 days ago
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