How to install Perl modules manually, using CPAN command, and other quick ways
...d XML-Parser-2.36.tar.gz# tar xvf XML-Parser-2.36.tar# cd XML-Parser-2.36Build the perl module: Build by running Makefile.PL, remember the case sensitivity, make and make test.# perl Ma...4096 days ago
2949 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ing long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presen...3371 days ago
3154 days ago
Genome Assembly Tools and Software - PART2 !!
...ted reads mapping. There is no limitaions on read widths or number of mismatches. RMAP can now map more than 8 million reads in an hour at full sensitivity to 2 mismatches MIRA 4.0.2 &...2832 days ago
Commercial and public next-gen-seq (NGS) software
...ects. Requires Linux or Mac OS X. PASS - It supports Illumina, SOLiD and Roche-FLX data formats and allows the user to modulate very finely the sensitivity of the alignments. Spaced see...3665 days ago
Software packages for next gen sequence analysis
...ts. Requires Linux or Mac OS X. * PASS - It supports Illumina, SOLiD and Roche-FLX data formats and allows the user to modulate very finely the sensitivity of the alignments. Spaced see...3389 days ago
Script to rapid genome clustering based on pairwise ANI
...fmt '6 std qlen slen' -max_target_seqs 10000 -o -num_threads 32 Note: using the -perc_identity flag will speed up the search at the cost of sensitivity: blastn -query -db -outfmt...781 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the LSC_requirements for running LSC. Download and set-up the LSC package. Follow the tutorial to see how LSC works on some example data. Read the ...Tags: LSC, long, read, error, correction, tool, fast, correction, sensitivity, good, accuracy
2249 days ago
Tags: Darwin-WGA, Co-processor, Increased, Sensitivity, Whole, Genome, Alignments, High, Speedup
1995 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ied in megabytes. Value <= 0 loads the entire file. [1024] General-purpose pre-set options: -x, --preset STR Pre-set parameters to increase sensitivity for different sequencing tech...2438 days ago