GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...igh sensitivity and precision across different error profiles, rates and sequencing technologies even with...d.Currently, development of a new spliced-alignment mode for mapping RNA-seq reads is under way.Descriptio...2527 days ago
2508 days ago
GeneProf: analysis of high-throughput sequencing experiment
...e that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generatio...p;Concept 'Workflows'). Integrated Analysis:Analysis of ChIP-seq and RNA-seq da...2498 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2353 days ago
2352 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2336 days ago
2324 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C W...1805 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...852 days ago
SciLifeLab tutorial for bioinformatics analysis !
...ovo Genome Assembly 2016 November - Uppsala2017 November - Uppsala RNA-seq course 2015 October - Uppsal...psala2016 October - Uppsala2017 March - Uppsala2017 November - UppsalaRNAseq tutorials R Programming Foun...2213 days ago