MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...sp;Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical...lacking a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons divided b...1279 days ago
Applied Computational Genomics Course at UU: Spring 2020
...of lectures covering key concepts and analytical strategies. A diverse range of biological questions enabled by modern DNA sequencing technologies will be explored including sequence alignment, the identific...1252 days ago
1221 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1009 days ago
984 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantifie...962 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
...orks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species.881 days ago