1546 days ago
10 NGS services companies around the globe !
...services and automation systems. The company’s genome services are suitable for custom/tailored projects that allow access to genomic sequence information. The Compan...1257 days ago
Bioinformatics tools for telomere to telomere assembly !
...ts from genomic samples to cluster and generate high-quality consensus sequences from HiFi reads (Zev Kronenb...; performs allele calling while detecting polymorphic sites within the sequences and removing potential chime...990 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...king a large number of short DNA sequences and placing them back togeth...ious knowledge of the source DNA sequence length, structure or composit...lied topics, identifying the DNA sequence of an organism is useful. Awa...a nutshell the protocol: Get the sequence file(s) read from the sequenc...1202 days ago
Frequently used bioinformatics tools for viral genome analysis !
...nformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplify...2013). Kraken: Kraken: ultrafast metagenomic sequence classification using exact al...eic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMt...1045 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (Fast...dex alignments (SAMtools) Primer sequence removal (iVar; amplicon data...ple variant calling and consensus sequence generation routes (iVar varia...assignment, mutation calling and sequence quality checks (Nextclade) I...875 days ago
Useful Bioinformatics Analysis Tools !
...mpression of protein multiple sequence alignment files, Bioinfo...Sz., Compression of DNA sequences in FASTQ format, Bioinf...ssor of collections of genome sequences. • Deorowic...collection of multiple genome sequences. • Danek, A...861 days ago
List of comparative genomics resources !
...T (database of expressed gene sequences) libraries and removes conta...TS -- Database Of Transcribed Sequences Search for Indices of gene...rative analysis of completely sequenced microbial genomes. MEGA...er (ESTs and full-length mRNA sequences organized into clusters that...675 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...ics. 54:595-609. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containing 1.42 mi...effect of a favourable gene. Genet. Res. 23: 23-35. Understanding sequence variation 1. Begun D. J., Aq...675 days ago
Understanding DUMP files from NCBI Taxonomy database !
...p; -- 1 if name is suppressed in GenBank entry lineage hidden subtree root flag (1 or 0) -- 1 if this subtree has no sequence data yet comments --...658 days ago