Results for "Sequence analysis."
Blogs
LiftOver is a necesary step to bring all genetical analysis to the same reference build. LiftOver ca...lifted.bed The outformat is as follow: Deleted in new: Sequence intersects no chains Partially deleted in new: Sequence...2172 days ago
- ...no-deprecated -m64 -g -O2 -MT sequenceUtil.o -MD -MP -MF .deps/sequenceUtil.Tpo -c -o sequenceUtil.o...r cigar_tweaker.o SAM_entry.o sequenceUtil.o SAM_reader.o Cigar.o st...-fopenmp -c ./analysis/sequenceUtil.cc -o obj/analysis/sequen...onRedKmerTable.o obj/analysis/sequenceU...
2145 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread an...ons in neuropeptide precursor sequences. Non-Redundant Patent S...onserved and specific protein sequence motifs. TreeDet -- Predic...2005 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping,&nb...ign to multiple positions, we can find one alignmnet position which sequence...1849 days ago
- This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/ The content of the...ineage hidden subtree root flag (1 or 0) -- 1 if this subtree has no sequence...
1560 days ago
10 NGS services companies around the globe !
...re suitable for custom/tailored projects that allow access to genomic sequence information. The Compan...ray layouts, project designing, and nucleic acid analysis to in-depth analysis. Genotypic Technology has its...1271 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for impro...es to cluster and generate high-quality consensus sequences from HiFi reads (Zev Kronenb...ling while detecting polymorphic sites within the sequences...1004 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly metho...g a large number of short DNA sequences and placing them back togeth...s knowledge of the source DNA sequence length, structure or composit...d topics, identifying the DNA sequence of an organism is useful. Awa...1216 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the...bution construction mcl: BLASP comparison of All-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks d...1167 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH...s/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplify...raken: Kraken: ultrafast metagenomic sequence classification using exact al...Res. 39, e57 (2011). SAMtools: The Sequence...1059 days ago
