Comment on "A quick guide to Phred scaling"
...ystem for representing the quality scores of sequencing reads. It is used to quantify...obability of an error in each base call in a sequencing read. Here is a quick guide t...t, which is a common format used for storing sequencing reads. Each quality score is...429 days ago
Comment on "Short-read assembly using Spades !"
...genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg...reads are of high quality and do not contain sequencing errors or low-quality bases....arch question and the characteristics of the sequencing data....429 days ago
429 days ago
Comment on "Short-read assembly using Spades !"
...eads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is a brief ov...ut data: The input data should be in FASTQ format, which contains the sequencing reads. If the reads are paire...435 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the ave...ference genome. Estimating the sequencing coverage is very importa...ollows. C = LN / G C is the sequencing coverage G is the length of...ength is 100bp), then we will get a sequencing coverage of 20x as...597 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...bilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ...1156 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://www.genomeweb.com/sequencing/mgi-unveils-extreme-throughput-sequencing-platform-agbt-enable-100-human-genome#.XlpFW5NKg0o1541 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://news.bloomberglaw.com/ip-law/illumina-hits-rival-bgi-with-new-dna-sequencing-patent-lawsuit1541 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://www.genomeweb.com/sequencing/illumina-sues-bgi-again-alleging-new-coolmps-chemistry-infringes-sbs-patents#.XlpFFJNKg0o1541 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...ant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple te...h Benchmarking Team:Benchmarking tools, Manuscript, GitHub Sequencing Data:Data and analyses from m...1574 days ago