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How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several...or the rescue. Dont worry biological data cruncher, this is true we are...tstart or never)? [atstart]Cache metadata (yes/no)? [yes]Policy on buil...nterface to SamTools library for DNA sequenci...3970 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological pro...er getting a solution. Learn to perform root cause analysis, learn enough about the under...3970 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3965 days ago
3965 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We...3973 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha heli...ire topology for 77% of the sequences in a standard dataset of 86 proteins with superv...atlab Conclusion/Implementation: Here discriminant data min...3965 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matla...to Bio-informatics work that is math heavy and deals with a large amount of data....3972 days ago
3965 days ago
Bio++ : C Language libraries for your biological need
...aries are as follows:Sequence analysis Sequence and Site object...and molecular evolution Data structure and IO Phylogenetic tr...Function objects).Statistics: DataTable object, with I/O from CSV fi...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3968 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinf...Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF)...3967 days ago
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Structural polymorphism analysis from NGS data
...oinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flag...in order to ensure compliance of produced datasets with pipelines requiremen...utational facilities and expertise in NGS data analysis, and will benefit as well fro...3969 days ago
3969 days ago
3969 days ago
3968 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this...Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database...3939 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the b...mes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! T...3740 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...: Making Sense out of Massive Data Air date: Wednesday, Febr...to perform current methods of analysis. Extracting new science from these massive datasets will require not only fas...used to attack challenges in sequencing, medical genomics and biolo...3922 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Proj...acillus subtilis. Until now, genome analysis could only be done in nat...equencer development has made genome analysis possible in an ordinary lab....understanding their personal genome data. So, I think it's amply possible...3937 days ago
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Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has...ad().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/all...1156 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a pr...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3551 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3546 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatic...ome, proteome, and metabolome analysis to reveal the molecular p...seful tools for comprehensive analysis and comparison of high-throughput experimental data in an integrated manner and besid...With the increasing amount of data in databases, there is already a...2382 days ago
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Comment on "List of non-commercial NGS genotype-calling software"
...ructural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lump...manta – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ]gridss&n...1162 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...tegration pipeline to utilize sequencing data generated by multiple technologies...nbsp;Manuscript, GitHub Sequencing Data:Data and analyses from most s...variants for pilot genomeGIAB data collected through 2016GA4GH Best...il Lists:General announcementsAnalysis Team Blog about GIAB Work1580 days ago