Results for "Sequencing Data Analysis"
Blogs
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n For...xt > textwithoutuppercase.txt; Print only the second column of the data whe...1394 days ago
10 NGS services companies around the globe !
...of the leading players in DNA sequencing and array-based technologies,...company provides DNA and RNA sequencing and bioservices solutions to...ices such as oligo synthesis, database construction, genome research, and bioservices analysis system consulting services. M...1273 days ago
Bioinformatics tools for telomere to telomere assembly !
...information from raw, short-read sequencing data to genotype a wide spectrum o...s that can assess the quality of data and the preprocessing pipelin... pbaa (PacBio Amplicon Analysis) – separates comple...her low-complexity gene amplicon data; performs allele calling while de...1005 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...s of tiny parts and read on a sequencing computer in a genome sequencing experiment. Depending on the...infectious diseases. Raw NGS dataReads can be saved as a Fasta file a...Frequent command use for the analysis are at: https://bioinformati...1218 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1169 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Fern...Adapter sequences: Optimal enzymes for amplifying sequencing libraries. Quail, M. a...mmomatic: A flexible trimmer for Illumina Sequence Data. Bo...1060 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note...947 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ fil...uence removal (iVar; amplicon data only) Duplicate read marking...nsensus; default for amplicon data || BCFTools, BEDTools; defaul...sment report (QUAST) Lineage analysis (Pangolin) Clade assignm...trimming (Cutadapt; amplicon data only) Choice of multiple assembl...890 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • &nb...ash;234, DSRC Compressor of sequencing reads. • Rog...space-saving solution for raw sequencing data, Bioinformatics, 2018; 34...obust mapping of whole genome sequenci...877 days ago
- Elgg is an open-source and highly customizable framework used for building an online s...ver, is written in PHP, and uses MySQL/MariaDB as a database backend, so you will need...systemctl restart apache2 Step 3 – Create a Database...
725 days ago
