Results for "Sequencing Data Analysis"
Users
Skills: Sequencing Data Analysis1620 days ago
- Brief description: PhD Student with experience in computational genomics and Bioinformatics. Led interdisciplinary research projects. Experience in Next generation sequencing techniques, targeted sequencing data analysis and developing pipelines.
1140 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several...or the rescue. Dont worry biological data cruncher, this is true we are...tstart or never)? [atstart]Cache metadata (yes/no)? [yes]Policy on buil...nterface to SamTools library for DNA sequenci...3950 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological pro...er getting a solution. Learn to perform root cause analysis, learn enough about the under...3951 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3946 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understan...e background of software/tool to better explain the data com...
3945 days ago
- +664 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We...3953 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha heli...ire topology for 77% of the sequences in a standard dataset of 86 proteins with superv...atlab Conclusion/Implementation: Here discriminant data min...3945 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matla...to Bio-informatics work that is math heavy and deals with a large amount of data....3952 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3945 days ago
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Pages
Bio++ : C Language libraries for your biological need
...aries are as follows:Sequence analysis Sequence and Site object...and molecular evolution Data structure and IO Phylogenetic tr...Function objects).Statistics: DataTable object, with I/O from CSV fi...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3948 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinf...Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF)...3948 days ago
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Top-level pages
- ...tegies of high-throughput DNA sequencing, so called the “high-th...T-NGS). The decreasing genome sequencing cost and desire to explore an...challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformati...
3948 days ago
- ...collection, organization and analysis of large amounts of biological data, using networks of computers and databases." - from the glossary fo...of protein domains. Combined analysis of structural and genomic data will certainly get more important...
3948 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequenci...
3812 days ago
- InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante. http://www.interpretomics.co/
3920 days ago
- +90 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...oinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flag...in order to ensure compliance of produced datasets with pipelines requiremen...utational facilities and expertise in NGS data analysis, and will benefit as well fro...3949 days ago
- ...produce large amounts of raw data that can be transformed into inform...growing amount of biological data becoming available and turn biologi...on a combination of published data. An important part of the gen...perience with high throughput sequencing analysis methods, machine learning, pr...
3949 days ago
- +305 more Opportunity posts
ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our...s, with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3949 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical geneti...pedigrees Investigation of DNA sharing in distantly related individuals CNV analysis in pedigrees and connections...
3948 days ago
- +71 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this...Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database...3919 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the b...mes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! T...3720 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...: Making Sense out of Massive Data Air date: Wednesday, Febr...to perform current methods of analysis. Extracting new science from these massive datasets will require not only fas...used to attack challenges in sequencing, medical genomics and biolo...3902 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Proj...acillus subtilis. Until now, genome analysis could only be done in nat...equencer development has made genome analysis possible in an ordinary lab....understanding their personal genome data. So, I think it's amply possible...3917 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1217 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has...ad().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/all...1136 days ago
- +76 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a pr...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3531 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3527 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatic...ome, proteome, and metabolome analysis to reveal the molecular p...seful tools for comprehensive analysis and comparison of high-throughput experimental data in an integrated manner and besid...With the increasing amount of data in databases, there is already a...2362 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It...3903 days ago
R is a free software programming language ...ly used among statisticians and data miners for developing statistical software and data analysis. R's popularity has incre...onductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statisti...3951 days ago
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Tags
Skills: Sequencing Data Analysis, R Programming, Python, Php + Mysql + JQuery, Bash Scripting
1620 days ago
Comments
Comment on "List of non-commercial NGS genotype-calling software"
...ructural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lump...manta – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ]gridss&n...1143 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...tegration pipeline to utilize sequencing data generated by multiple technologies...nbsp;Manuscript, GitHub Sequencing Data:Data and analyses from most s...variants for pilot genomeGIAB data collected through 2016GA4GH Best...il Lists:General announcementsAnalysis Team Blog about GIAB Work1560 days ago
- +12 more Comments
