Results for "Sequencing Technology"
Top-level pages
Software packages for next gen sequence analysis
...Solutions for Next Generation Sequencing data analysis. * JMP Genomics...s, emerged by next-generation sequencing technology, back to the reference genome...thered through 454 sequencing technology (GS20 or GS FLX). Compatible...es from the 454 Life Sciences sequencing machines. It was designed to...3245 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s sample assembly, targeted resequencing, exome alignment, gene panels...ll commercial next generation sequencing and microarray file format as...Description: family-based sequencing studies- provides probability...rdquo;can accept a variety of sequencing inputs and configurations&rdq...2911 days ago
- alignment: the mapping of a raw sequence read to a location within a referen...for each base; usually generated by sequencing machines. genotype likelihoo...f G to A. mate-pair: in paired-end sequencing, both ends of a single DNA or...cation is covered by 30 independent sequencing...
2871 days ago
Genome Assembly Tools and Software - PART1 !!
..., like those produced by SMRT sequencing technologies (PacBio RS II) a...ta, incorporates cutting-edge technology and algorithms, while also su...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...2.2 – Hybrid Sequencing Technology Assembler ZORRO is a hybri...2688 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from...2524 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-per...n and collection of utilities for Next-Generation Sequencing (NGS) data analysis masukomi...bsp;- A Modern Perl Framework for High Throughput Sequencing...2491 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid deter...main/qcluster.html Reads error correction Lighter Correction of sequencing errors in raw, whole genome sequencing...2373 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&nbs...orxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing...2353 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data an...
2353 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also...sequence features, next-generation sequencing (NGS) data and the results of...of sequences derived from multiple sequencing technologies. Low- or high-de...que sequences in an entire Illumina sequencing...2286 days ago
