Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a...ps://www.omix-visualization.com PathVisio Biological pathway analysis software that allows drawing, editing...2301 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...heterozygous SNPs and Indels; software composed of 2 modules (kissnp...gle version 4 Description: software package: genotype calling, ph...Annotation Corrector; Ad hoc software, fixes incorrect amino acid p...ldquo;SCAN can be utilized in several ways including: (i) queries of...2922 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that man...(reversed 180°), still reads CGAAGC. The European Molecular Biology Open Software Suite (EMBOSS) includes some...2225 days ago
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...grates the Oases pipeline and several optimizations specifically des...ome Data. Trans-ABySS is a software pipeline for analyzing ABySS-...Rainbow package consists of several programs used for RAD-seq rela...Contiguity is interactive software for the visualization and man...2699 days ago
Awesome perl frameworks, libraries and software - PART 1
...- SailAlign is an open-source software toolkit for robust long speec.../blawd - Simple Blogging Software in Perl, similar to blosxome...- dumps a Postgres schema in several useful documentary forms xen-...messages Perl-Toolchain-Gang/Software-License - perl represent...2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...special type of k-mers) Software (C++) http://www.csbio.unc.e...from NGS data (k-mer based) Software (Python) https://github.com/...PacBio reads, draft genomes) Software (Perl) https://github.com/wa...prehensive sequence database Software (C++) https://ccb.jhu.edu/so...2385 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely...ngle-cell RNA-seq data with Bioconductor SCell: single-cell RNA-seq analysis software https://github.com/diazlab/S...2364 days ago
Tools for bacterial whole genome annotation
...n and pathway analysis. Takes several hours per genome but I think...RAST, and you will need several extra steps if you want to do...blies created via an assembly software. PAGIT compiled four tools: (...RATT for help annotation. The software was mainly created to analyze...2345 days ago
List of visualization tools for network biology
Network analysis is any structured technique use...y Chemical kinetics stochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin...algorithms https://www.broadinstitute.org/software/spectralnet Tulip Ena...2302 days ago