EWAS: epigenome-wide association study software 2.0
...istinctive features. EWAS2.0 software was developed based on our “population epigenetic framework” and can perform: (1) epigenome-wide single marker association study; (2)...2257 days ago
SciLifeLab tutorial for bioinformatics analysis !
...March - Uppsala2017 November - UppsalaRNAseq tutorials R Programming Foundations for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis...2230 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find th...2213 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on a...2209 days ago
Metassembler: merging and optimizing de novo genome assemblies
...ly projects typically run multiple algorithms in an attempt to find the single best assembly, although those...tassembler algorithm that merges multiple assemblies of a genome into a single superior sequence.2209 days ago
2181 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
...a.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets...2175 days ago
2174 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestio...2174 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms...2206 days ago