Results for "Single Nucleotide Polymorphisms"
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...ion and the classification of single nucleotide polymorphisms in transformed De Brui...“The output format is a single row for each putative de novo mut...te SNPs, INDELs, and multiple-nucleotide polymorphisms; categorizes effec...s that are caused by multiple nucleotide variations; Uses existing annota...2921 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many...ics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonuclei...bsp;(scan_for_match) Emboss Palindrome Other nucleotide re...2223 days ago
- ...process where both ends of a single DNA or RNA fragment are seque...ntly of the Broad Institute. single-read sequencing: sequencing p...ic variants, including single nucleotide polymorphisms, insertions, deletions and...DeepSequencing Techniques of nucleotide sequence analysis that increase...
2881 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a fi...in genomes can impede the assembly of a single sequence. The tool Scaffold_b...tator was designed to assemble Illumina single or...r that is designed for short reads. The single-proces...2697 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and t...****************************************** Function: ( cryptic text describing single functi...2671 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl&nb...nsenum is a perl script that enumerates DNS information evalEmpire/perl5i - A single module...2501 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two differe...-- The development of a new clade; the splitting of a single lin...up -- The two clades resulting from the splitting of a single lineag...2474 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid...--sc this flag is required for MDA (single-cel...<filename> file with unpaired reads for single reads...
2363 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has...ion Following are the useful links: Single Cell RNAseq data analysis Tut...step workflow for low-level analysis of single-cel...calable latent-factor models applied to single-cell R...2362 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including ex...
2362 days ago
