Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different...ubstitution, it also considers the transposition of two adjacent characters to be a single edit....2353 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and...fast tool for an automated and a systematic comparison of different annotations of single genome...2344 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages...N fully, Mojolicious by design provides most of what an average app might need in a single downlo...2333 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which ge...eads)In this case, "int=t" means that the input file is paired and interleaved. For single-end re...2326 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for impro...read pileups and easy visualization of putative single nucleotide and structural variation htt...viewer/ MapView Alignments of huge-scale single-end an...2296 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled...862 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Ac...rsatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com.../sogo.unamur.be/SOGo/so/jnarayan/Mail/view Tetra-Nucleotide An...2253 days ago
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Tools to Predict the Impact of Missense Variants !
...utations discovered in cancer or missense polymorphisms” LRT“Iden...h coding variants, that is, nonsynonymous single‐nucleotide variants, and noncoding varia...h coding variants, that is, nonsynonymous single‐nucleotide variants, and noncoding variants...2215 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensivel...: SOAP2 http://soap.genomics.org.cn/index.html Single-sam...dbSNP) Package for NGS data analysis, which includes a single indivi...2108 days ago