BOL: Results for "Size"

Results for "Size"

- BioStar@biostar
Check the file systems and sizes. $ df --block-size=G #Linux #Size #df
Tags: Linux, Size, df
2032 days ago
- Neelam Jha@neelam
List all files by size in Linux $ ls -l -S | sort -k 5 -n #Linux #Size #List
Tags: Linux, Size, List
1665 days ago
- Shruti Paniwala@shruti
MGSE: Mapping-based Genome Size Estimation
MGSE can harness the power of files generated in genome sequencing projects to predict the genome size. Required are the FASTA file containing a high continuity assembly and a BAM file with all available reads mapped to this assembly. The script construct_cov_file.py (https://doi.org/10.1186/s128...
Tags: MGSE, Mapping-based, Genome, Size, Estimation
1573 days ago
- Jit@jit.aber
Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size
Tags: split, linux, size
2499 days ago
- Jit@jit.aber
#Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )
Tags: Filter, reads, size
2494 days ago
- LEGE@lege
#Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'
Tags: Estimate, insert, size
1626 days ago